PH01000789G0320's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G61030 : 4.00E-134
Blast annotation: WAPL (Wings apart-like protein regulation of heterochromatin) protein
2.Location
Scaffold: PH01000789
Strand: +
| Region | Start | End |
| gene | 182370 | 193727 |
| mRNA | 182370 | 193727 |
| exon | 182370 | 182626 |
| exon | 182810 | 183135 |
| exon | 183670 | 184159 |
| exon | 184803 | 184852 |
| exon | 186722 | 186821 |
| exon | 187265 | 187598 |
| exon | 187867 | 187979 |
| exon | 188612 | 188740 |
| exon | 188898 | 188991 |
| exon | 189103 | 189186 |
| exon | 189561 | 190222 |
| exon | 191057 | 191364 |
| exon | 191514 | 191658 |
| exon | 192329 | 192426 |
| exon | 192530 | 192611 |
| exon | 192705 | 192815 |
| exon | 193265 | 193727 |
| CDS | 182501 | 182626 |
| CDS | 182810 | 183135 |
| CDS | 183670 | 184159 |
| CDS | 184803 | 184852 |
| CDS | 186722 | 186821 |
| CDS | 187265 | 187598 |
| CDS | 187867 | 187979 |
| CDS | 188612 | 188740 |
| CDS | 188898 | 188991 |
| CDS | 189103 | 189186 |
| CDS | 189561 | 190222 |
| CDS | 191057 | 191364 |
| CDS | 191514 | 191658 |
| CDS | 192329 | 192426 |
| CDS | 192530 | 192611 |
| CDS | 192705 | 192815 |
| CDS | 193265 | 193348 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07814.12 | WAPL | 256 | 314 |
| PF07814.12 | WAPL | 332 | 872 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.