PH01000794G0570's details annotation
1.Annotation
ICBR annotation: gibberellin 20 oxidase 2, putative, expressed
Blast result AT4G25420 : 3.80E-94
Blast annotation: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
2.Location
Scaffold: PH01000794
Strand: +
| Region | Start | End |
| gene | 395852 | 401578 |
| mRNA | 395852 | 401578 |
| exon | 395852 | 396528 |
| exon | 396629 | 396953 |
| exon | 398991 | 399074 |
| exon | 400281 | 400586 |
| exon | 400657 | 400670 |
| exon | 401030 | 401578 |
| CDS | 395945 | 396528 |
| CDS | 396629 | 396953 |
| CDS | 398991 | 399074 |
| CDS | 400281 | 400586 |
| CDS | 400657 | 400670 |
| CDS | 401030 | 401144 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14226.5 | DIOX_N | 72 | 171 |
| PF03171.19 | 2OG-FeII_Oxy | 236 | 362 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.