PH01000800G0400's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT3G13224 : 4.30E-76
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein
2.Location
Scaffold: PH01000800
Strand: +
| Region | Start | End |
| gene | 367463 | 371399 |
| mRNA | 367463 | 371399 |
| exon | 367463 | 367816 |
| exon | 367918 | 367958 |
| exon | 368646 | 368809 |
| exon | 368955 | 369054 |
| exon | 369143 | 369315 |
| exon | 369561 | 371399 |
| CDS | 367776 | 367816 |
| CDS | 367918 | 367958 |
| CDS | 368646 | 368809 |
| CDS | 368955 | 369054 |
| CDS | 369143 | 369315 |
| CDS | 369561 | 370154 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 16 | 83 |
| PF00076.21 | RRM_1 | 104 | 171 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | heterogeneous nuclear ribonucleoprotein A1/A3 | ko03041 | K12741 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.