PH01000803G0360's details annotation
1.Annotation
ICBR annotation: vacuolar-processing enzyme precursor, putative, expressed
Blast result AT4G32940 : 3.00E-108
Blast annotation: gamma vacuolar processing enzyme
2.Location
Scaffold: PH01000803
Strand: +
| Region | Start | End |
| gene | 271954 | 278505 |
| mRNA | 271954 | 278505 |
| exon | 271954 | 272272 |
| exon | 273038 | 273202 |
| exon | 273653 | 273809 |
| exon | 273965 | 274050 |
| exon | 274149 | 274348 |
| exon | 275208 | 275414 |
| exon | 276181 | 276229 |
| exon | 276314 | 276526 |
| exon | 276932 | 277138 |
| exon | 277766 | 278505 |
| CDS | 272090 | 272272 |
| CDS | 273038 | 273202 |
| CDS | 273653 | 273809 |
| CDS | 273965 | 274050 |
| CDS | 274149 | 274348 |
| CDS | 275208 | 275414 |
| CDS | 276181 | 276229 |
| CDS | 276314 | 276526 |
| CDS | 276932 | 277138 |
| CDS | 277766 | 277948 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000969 | Sulfur_relay_system Cysteine_and_methionine_metabolism Phosphatidylinositol_signaling_system Glycerophospholipid_metabolism cysteine-type endopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01650.17 | Peptidase_C13 | 44 | 264 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004197 | cysteine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.