Annotation of co-expression genes

PH01000804G0500's details annotation

1.Annotation

ICBR annotation: soluble starch synthase 3, chloroplast precursor, putative, expressed

Blast result AT1G11720 : 0.00E+00
Blast annotation: starch synthase 3

2.Location

Scaffold: PH01000804
Strand: +

RegionStartEnd
gene324538332135
mRNA324538332135
exon324538325804
exon326105326319
exon326497326767
exon327238327419
exon327488327595
exon327738327767
exon328173328202
exon328544328653
exon329015329110
exon329336329438
exon329747329917
exon330030330158
exon330514330696
exon330820330951
exon331038331149
exon331236331359
exon331621332135
CDS324574325804
CDS326105326319
CDS326497326767
CDS327238327419
CDS327488327595
CDS327738327767
CDS328173328202
CDS328544328653
CDS329015329110
CDS329336329438
CDS329747329917
CDS330030330158
CDS330514330696
CDS330820330951
CDS331038331149
CDS331236331359
CDS331621331753

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Carbohydrate-Binding_ModulesCBM53
GlycosylTransferasesGT5

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16760.4CBM53186265
PF16760.4CBM53360446
PF16760.4CBM53522607
PF08323.10Glyco_transf_5618834
PF00534.19Glycos_transf_19191040

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0009011starch synthase activity
GO:0009058biosynthetic process
GO:0009250glucan biosynthetic process
GO:2001070starch binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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