PH01000808G0380's details annotation
1.Annotation
ICBR annotation: OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed
Blast result AT5G16120 : 2.00E-101
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000808
Strand: +
| Region | Start | End |
| gene | 269240 | 275960 |
| mRNA | 269240 | 275960 |
| exon | 269240 | 269829 |
| exon | 270945 | 271169 |
| exon | 272042 | 272071 |
| exon | 272712 | 272838 |
| exon | 272924 | 273070 |
| exon | 274170 | 274300 |
| exon | 274379 | 274516 |
| exon | 275003 | 275101 |
| exon | 275568 | 275960 |
| CDS | 269578 | 269829 |
| CDS | 270945 | 271169 |
| CDS | 272042 | 272071 |
| CDS | 272712 | 272838 |
| CDS | 272924 | 273070 |
| CDS | 274170 | 274300 |
| CDS | 274379 | 274516 |
| CDS | 275003 | 275101 |
| CDS | 275568 | 275681 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07491.10 | PPI_Ypi1 | 35 | 63 |
| PF12146.7 | Hydrolase_4 | 192 | 387 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.