PH01000810G0240's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G42130 : 4.80E-87
Blast annotation: Plastid-lipid associated protein PAP / fibrillin family protein
2.Location
Scaffold: PH01000810
Strand: +
| Region | Start | End |
| gene | 139262 | 144019 |
| mRNA | 139262 | 144019 |
| exon | 139262 | 139748 |
| exon | 140110 | 140312 |
| exon | 140993 | 141089 |
| exon | 141402 | 141618 |
| exon | 142069 | 142121 |
| exon | 143458 | 144019 |
| CDS | 139533 | 139748 |
| CDS | 140110 | 140312 |
| CDS | 140993 | 141089 |
| CDS | 141402 | 141618 |
| CDS | 142069 | 142121 |
| CDS | 143458 | 143568 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04755.11 | PAP_fibrillin | 89 | 275 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0009507 | chloroplast |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.