PH01000816G0580's details annotation
1.Annotation
ICBR annotation: CHIT14 - Chitinase family protein precursor, expressed
Blast result AT3G12500 : 8.10E-74
Blast annotation: basic chitinase
2.Location
Scaffold: PH01000816
Strand: +
| Region | Start | End |
| gene | 399250 | 400612 |
| mRNA | 399250 | 400612 |
| exon | 399250 | 399607 |
| exon | 399722 | 399833 |
| exon | 400148 | 400612 |
| CDS | 399328 | 399607 |
| CDS | 399722 | 399833 |
| CDS | 400148 | 400517 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00182.18 | Glyco_hydro_19 | 30 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004568 | chitinase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006032 | chitin catabolic process |
| GO:0016998 | cell wall macromolecule catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.