PH01000823G0810's details annotation
1.Annotation
ICBR annotation: mttA/Hcf106 family protein, putative, expressed
Blast result AT5G52440 : 2.90E-36
Blast annotation: Bacterial sec-independent translocation protein mttA/Hcf106
2.Location
Scaffold: PH01000823
Strand: +
| Region | Start | End |
| gene | 498231 | 500939 |
| mRNA | 498231 | 500939 |
| exon | 498231 | 499027 |
| exon | 499221 | 499342 |
| exon | 499857 | 499916 |
| exon | 500021 | 500141 |
| exon | 500649 | 500939 |
| CDS | 498856 | 499027 |
| CDS | 499221 | 499342 |
| CDS | 499857 | 499916 |
| CDS | 500021 | 500141 |
| CDS | 500649 | 500785 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02416.15 | MttA_Hcf106 | 84 | 134 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005886 | plasma membrane |
| GO:0008565 | protein transporter activity |
| GO:0009306 | protein secretion |
| GO:0015031 | protein transport |
| GO:0016020 | membrane |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.