PH01000836G0090's details annotation
1.Annotation
ICBR annotation: RNA polymerase Rpb1, domain 2 family protein, expressed
Blast result AT2G40030 : 7.00E-137
Blast annotation: nuclear RNA polymerase D1B
2.Location
Scaffold: PH01000836
Strand: +
| Region | Start | End |
| gene | 55210 | 60618 |
| mRNA | 55210 | 60618 |
| exon | 55210 | 55405 |
| exon | 55574 | 55848 |
| exon | 56575 | 56748 |
| exon | 56823 | 56963 |
| exon | 57212 | 58983 |
| exon | 59178 | 59286 |
| exon | 59437 | 60618 |
| CDS | 55399 | 55405 |
| CDS | 55574 | 55848 |
| CDS | 56575 | 56748 |
| CDS | 56823 | 56963 |
| CDS | 57212 | 58983 |
| CDS | 59178 | 59286 |
| CDS | 59437 | 59853 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11523.7 | DUF3223 | 784 | 857 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005507 | copper ion binding |
| GO:0009308 | amine metabolic process |
| GO:0048038 | quinone binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.