PH01000838G0200's details annotation
1.Annotation
ICBR annotation: ribulose-phosphate 3-epimerase, putative, expressed
Blast result AT3G01850 : 3.00E-102
Blast annotation: Aldolase-type TIM barrel family protein
2.Location
Scaffold: PH01000838
Strand: +
| Region | Start | End |
| gene | 156503 | 167969 |
| mRNA | 156503 | 167969 |
| exon | 156503 | 160336 |
| exon | 161603 | 161637 |
| exon | 163054 | 163116 |
| exon | 163205 | 163311 |
| exon | 163377 | 163474 |
| exon | 167386 | 167478 |
| exon | 167719 | 167969 |
| CDS | 160223 | 160336 |
| CDS | 161603 | 161637 |
| CDS | 163054 | 163116 |
| CDS | 163205 | 163311 |
| CDS | 163377 | 163474 |
| CDS | 167386 | 167478 |
| CDS | 167719 | 167874 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000842 | Carbon_fixation_in_photosynthetic_organisms nuclear chromosome, Ino80_complex ribulose-phosphate 3-epimerase activity, helicase activity, phosphoglycerate kinase activity, SNF2 Transcription_Regulator(from iTAK) racemase and epimerase activity, acting on carbohydrates and derivatives, Pentose_phosphate_pathway Pentose_and_glucuronate_interconversions pentose-phosphate shunt, |
| coexpression network | CFinderM000843 | ribulose-phosphate 3-epimerase activity, helicase activity, SNF2 Transcription_Regulator(from iTAK) racemase and epimerase activity, acting on carbohydrates and derivatives, pentose-phosphate shunt, Carbon_fixation_in_photosynthetic_organisms Pentose_and_glucuronate_interconversions Pentose_phosphate_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00834.18 | Ribul_P_3_epim | 5 | 202 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pentose phosphate pathway | ribulose-phosphate 3-epimerase [EC:5.1.3.1] | ko00030 | K01783 |
| Pentose and glucuronate interconversions | ribulose-phosphate 3-epimerase [EC:5.1.3.1] | ko00040 | K01783 |
| Carbon fixation in photosynthetic organisms | ribulose-phosphate 3-epimerase [EC:5.1.3.1] | ko00710 | K01783 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004750 | ribulose-phosphate 3-epimerase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006098 | pentose-phosphate shunt |
| GO:0008152 | metabolic process |
| GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.