PH01000841G0100's details annotation
1.Annotation
ICBR annotation: dual specificity protein phosphatase, putative, expressed
Blast result AT2G35680 : 1.90E-81
Blast annotation: Phosphotyrosine protein phosphatases superfamily protein
2.Location
Scaffold: PH01000841
Strand: -
| Region | Start | End |
| gene | 82252 | 89209 |
| mRNA | 82252 | 89209 |
| exon | 82252 | 84106 |
| exon | 84293 | 84677 |
| exon | 85264 | 85353 |
| exon | 85448 | 85530 |
| exon | 86077 | 86170 |
| exon | 88162 | 88284 |
| exon | 88660 | 89209 |
| CDS | 83904 | 84106 |
| CDS | 84293 | 84677 |
| CDS | 85264 | 85353 |
| CDS | 85448 | 85530 |
| CDS | 86077 | 86170 |
| CDS | 88162 | 88284 |
| CDS | 88660 | 88911 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00782.19 | DSPc | 122 | 220 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004725 | protein tyrosine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity |
| GO:0016311 | dephosphorylation |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.