PH01000841G0650's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G17350 : 4.20E-38
Blast annotation: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region
2.Location
Scaffold: PH01000841
Strand: -
| Region | Start | End |
| gene | 448316 | 451081 |
| mRNA | 448316 | 451081 |
| exon | 448316 | 449025 |
| exon | 449561 | 449704 |
| exon | 449794 | 450169 |
| exon | 450392 | 450685 |
| exon | 450723 | 451081 |
| CDS | 448793 | 449025 |
| CDS | 449561 | 449704 |
| CDS | 449794 | 450169 |
| CDS | 450392 | 450685 |
| CDS | 450723 | 450833 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05703.10 | Auxin_canalis | 75 | 126 |
| PF05703.10 | Auxin_canalis | 139 | 288 |
| PF08458.9 | PH_2 | 301 | 369 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.