PH01000856G0080's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G57765 : 4.70E-24
Blast annotation: -
2.Location
Scaffold: PH01000856
Strand: +
| Region | Start | End |
| gene | 46400 | 50864 |
| mRNA | 46400 | 50864 |
| exon | 46400 | 47418 |
| exon | 50434 | 50864 |
| CDS | 47322 | 47418 |
| CDS | 50434 | 50669 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000591 | HB-other Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport WASH_complex actin cytoskeleton, spliceosomal complex, pre-mRNA_intronic_binding |
| coexpression network | CFinderM001444 | nucleolus, SNARE_interactions_in_vesicular_transport Homologous_recombination SOS_response DNA metabolic process, ribosome biogenesis, single-stranded DNA binding, DNA-dependent ATPase activity, |
| coexpression network | CFinderM001627 | SET Transcription_Regulator(from iTAK) intracellular protein transport, SNARE_interactions_in_vesicular_transport mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.