PH01000857G0540's details annotation
1.Annotation
ICBR annotation: phosphatase, putative, expressed
Blast result AT5G03080 : 9.40E-59
Blast annotation: Phosphatidic acid phosphatase (PAP2) family protein
2.Location
Scaffold: PH01000857
Strand: +
| Region | Start | End |
| gene | 439148 | 444639 |
| mRNA | 439148 | 444639 |
| exon | 439148 | 439590 |
| exon | 439875 | 439947 |
| exon | 442075 | 442359 |
| exon | 444054 | 444639 |
| CDS | 439463 | 439590 |
| CDS | 439875 | 439947 |
| CDS | 442075 | 442359 |
| CDS | 444054 | 444260 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01569.20 | PAP2 | 68 | 183 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.