PH01000868G0050's details annotation
1.Annotation
ICBR annotation: RNA helicase SDE3, putative, expressed
Blast result AT1G05460 : 0.00E+00
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000868
Strand: +
| Region | Start | End |
| gene | 25692 | 31703 |
| mRNA | 25692 | 31703 |
| exon | 25692 | 26561 |
| exon | 28474 | 29264 |
| exon | 29610 | 31061 |
| exon | 31159 | 31703 |
| CDS | 26459 | 26561 |
| CDS | 28474 | 29264 |
| CDS | 29610 | 31061 |
| CDS | 31159 | 31644 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13086.5 | AAA_11 | 378 | 464 |
| PF13086.5 | AAA_11 | 493 | 562 |
| PF13087.5 | AAA_12 | 584 | 777 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009616 | virus induced gene silencing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.