PH01000881G0230's details annotation
1.Annotation
ICBR annotation: TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed
Blast result AT1G70520 : 2.00E-149
Blast annotation: cysteine-rich RLK (RECEPTOR-like protein kinase) 2
2.Location
Scaffold: PH01000881
Strand: -
| Region | Start | End |
| gene | 155601 | 160339 |
| mRNA | 155601 | 160339 |
| exon | 155601 | 156193 |
| exon | 156910 | 157060 |
| exon | 157181 | 157415 |
| exon | 157741 | 157951 |
| exon | 158062 | 158198 |
| exon | 158283 | 158408 |
| exon | 159125 | 160339 |
| CDS | 155870 | 156193 |
| CDS | 156910 | 157060 |
| CDS | 157181 | 157415 |
| CDS | 157741 | 157951 |
| CDS | 158062 | 158198 |
| CDS | 158283 | 158408 |
| CDS | 159125 | 159911 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000097 | GT59 GlycosylTransferases mRNA_cleavage_factor_complex Other_types_of_O-glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01657.16 | Stress-antifung | 54 | 138 |
| PF01657.16 | Stress-antifung | 153 | 247 |
| PF00069.24 | Pkinase | 337 | 602 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.