Annotation of co-expression genes

PH01000885G0470's details annotation

1.Annotation

ICBR annotation: serine/threonine kinase, putative

Blast result AT4G21390 : 1.80E-67
Blast annotation: S-locus lectin protein kinase family protein

2.Location

Scaffold: PH01000885
Strand: -

RegionStartEnd
gene314723317456
mRNA314723317456
exon314723315054
exon315150315300
exon315391315628
exon315891317456
CDS314752315054
CDS315150315300
CDS315391315628
CDS315891317184

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000708Rab GDP-dissociation inhibitor activity,
RLK-Pelle_DLSV (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01453.23B_lectin77189
PF00954.19S_locus_glycop220335
PF08276.10PAN_2358424
PF07714.16Pkinase_Tyr436562

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0048544recognition of pollen

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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