PH01000886G0020's details annotation
1.Annotation
ICBR annotation: ACT domain containing protein, expressed
Blast result AT3G01990 : 6.00E-131
Blast annotation: ACT domain repeat 6
2.Location
Scaffold: PH01000886
Strand: +
| Region | Start | End |
| gene | 29874 | 33824 |
| mRNA | 29874 | 33824 |
| exon | 29874 | 30153 |
| exon | 30814 | 30974 |
| exon | 31078 | 31145 |
| exon | 31246 | 33824 |
| CDS | 30068 | 30153 |
| CDS | 30814 | 30974 |
| CDS | 31078 | 31145 |
| CDS | 31246 | 32346 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13740.5 | ACT_6 | 134 | 178 |
| PF01842.24 | ACT | 351 | 413 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016597 | amino acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.