Annotation of co-expression genes

PH01000887G0320's details annotation

1.Annotation

ICBR annotation: peroxisomal multifunctional enzyme type 2, putative

Blast result AT5G42890 : 2.60E-46
Blast annotation: sterol carrier protein 2

2.Location

Scaffold: PH01000887
Strand: -

RegionStartEnd
gene177414179574
mRNA177414179574
exon177414177744
exon177846177945
exon178024178084
exon178210179574
CDS177663177744
CDS177846177945
CDS178024178084
CDS178210178332

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02036.16SCP219111

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0032934sterol binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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