PH01000888G0440's details annotation
1.Annotation
ICBR annotation: caffeoyl-CoA O-methyltransferase, putative, expressed
Blast result AT3G62000 : 4.50E-87
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000888
Strand: +
| Region | Start | End |
| gene | 288011 | 291594 |
| mRNA | 288011 | 291594 |
| exon | 288011 | 288523 |
| exon | 288663 | 288716 |
| exon | 288918 | 289251 |
| exon | 289471 | 289555 |
| exon | 290071 | 290154 |
| exon | 290717 | 291594 |
| CDS | 288388 | 288523 |
| CDS | 288663 | 288716 |
| CDS | 288918 | 289251 |
| CDS | 289471 | 289555 |
| CDS | 290071 | 290154 |
| CDS | 290717 | 290869 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001548 | protein methyltransferase activity, proton-transporting ATP synthase complex, catalytic core F(1), clathrin adaptor complex, proton-transporting ATPase activity, rotational mechanism, O-methyltransferase activity, hydrogen ion transporting ATP synthase activity, rotational mechanism, protein methylation, ATP synthesis coupled proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01596.16 | Methyltransf_3 | 81 | 281 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008171 | O-methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.