PH01000890G0750's details annotation
1.Annotation
ICBR annotation: dehydrogenase, putative, expressed
Blast result AT4G37990 : 2.00E-122
Blast annotation: elicitor-activated gene 3-2
2.Location
Scaffold: PH01000890
Strand: +
| Region | Start | End |
| gene | 440291 | 445730 |
| mRNA | 440291 | 445730 |
| exon | 440291 | 441096 |
| exon | 443662 | 443775 |
| exon | 443967 | 444480 |
| exon | 445103 | 445256 |
| exon | 445430 | 445730 |
| CDS | 440990 | 441096 |
| CDS | 443662 | 443775 |
| CDS | 443967 | 444480 |
| CDS | 445103 | 445256 |
| CDS | 445430 | 445632 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08240.11 | ADH_N | 41 | 154 |
| PF00107.25 | ADH_zinc_N | 197 | 320 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Phenylpropanoid biosynthesis | cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] | ko00940 | K00083 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.