Annotation of co-expression genes

PH01000891G0020's details annotation

1.Annotation

ICBR annotation: aldehyde dehydrogenase, putative, expressed

Blast result AT1G44170 : 5.00E-164
Blast annotation: aldehyde dehydrogenase 3H1

2.Location

Scaffold: PH01000891
Strand: -

RegionStartEnd
gene884912678
mRNA884912678
exon88499982
exon1007210221
exon1047710567
exon1065710829
exon1091511019
exon1109511210
exon1139911605
exon1220412300
exon1240412678
CDS97379982
CDS1007210221
CDS1047710567
CDS1065710829
CDS1091511019
CDS1109511210
CDS1139911605
CDS1220412300
CDS1240412466

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000016protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
coexpression networkCFinderM000698RLK-Pelle_L-LEC (from iTAK)
cellular aldehyde metabolic process,
Caffeine_metabolism
Valine,_leucine_and_isoleucine_degradation
Lysine_degradation
Chloroalkane_and_chloroalkene_degradation
beta-Alanine_metabolism
SNARE_interactions_in_vesicular_transport
Limonene_and_pinene_degradation
Histidine_metabolism
Propanoate_metabolism
Tryptophan_metabolism
Drug_metabolism_-_other_enzymes
coexpression networkCFinderM000892Valine,_leucine_and_isoleucine_degradation
cellular aldehyde metabolic process,
aldehyde dehydrogenase [NAD(P)+] activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00171.21Aldedh7368

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Lysine degradationaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00310K00128
Arginine and proline metabolismaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00330K00128
Histidine metabolismaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00340K00128
Tryptophan metabolismaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00380K00128
beta-Alanine metabolismaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00410K00128
Limonene and pinene degradationaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00903K00128
Chloroalkane and chloroalkene degradationaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00625K00128
Glycolysis / Gluconeogenesisaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00010K00128
Pentose and glucuronate interconversionsaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00040K00128
Ascorbate and aldarate metabolismaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00053K00128
Pyruvate metabolismaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00620K00128
Propanoate metabolismaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00640K00128
Fatty acid metabolismaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko01212K00128
Glycerolipid metabolismaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]ko00561K00128
303 Valine, leucine and isoleucine degradationaldehyde dehydrogenase (NAD+) [EC:1.2.1.3]K00128

10.Gene Ontology

GO AccessionGO Annotation
GO:0004030aldehyde dehydrogenase [NAD(P)+] activity
GO:0006081cellular aldehyde metabolic process
GO:0008152metabolic process
GO:0016491oxidoreductase activity
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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