PH01000909G0340's details annotation
1.Annotation
ICBR annotation: receptor-like serine-threonine protein kinase, putative, expressed
Blast result AT4G23280 : 1.00E-120
Blast annotation: cysteine-rich RLK (RECEPTOR-like protein kinase) 20
2.Location
Scaffold: PH01000909
Strand: -
| Region | Start | End |
| gene | 200338 | 203558 |
| mRNA | 200338 | 203558 |
| exon | 200338 | 201055 |
| exon | 201222 | 201372 |
| exon | 201473 | 201710 |
| exon | 201798 | 202008 |
| exon | 202126 | 202310 |
| exon | 202404 | 202514 |
| exon | 202692 | 203558 |
| CDS | 200717 | 201055 |
| CDS | 201222 | 201372 |
| CDS | 201473 | 201710 |
| CDS | 201798 | 202008 |
| CDS | 202126 | 202310 |
| CDS | 202404 | 202514 |
| CDS | 202692 | 203520 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01657.16 | Stress-antifung | 27 | 123 |
| PF01657.16 | Stress-antifung | 155 | 249 |
| PF07714.16 | Pkinase_Tyr | 366 | 628 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.