PH01000914G0350's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G44770 : 6.90E-25
Blast annotation: -
2.Location
Scaffold: PH01000914
Strand: +
| Region | Start | End |
| gene | 219266 | 224738 |
| mRNA | 219266 | 224738 |
| exon | 219266 | 220402 |
| exon | 220976 | 221090 |
| exon | 221215 | 221420 |
| exon | 221503 | 221530 |
| exon | 221873 | 221936 |
| exon | 222280 | 222388 |
| exon | 222797 | 224738 |
| CDS | 220127 | 220402 |
| CDS | 220976 | 221090 |
| CDS | 221215 | 221420 |
| CDS | 221503 | 221530 |
| CDS | 221873 | 221936 |
| CDS | 222280 | 222388 |
| CDS | 222797 | 222904 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001744 | Ribosome_biogenesis_in_eukaryotes Aminoacyl-tRNA_biosynthesis threonyl-tRNA aminoacylation, threonine-tRNA ligase activity, tRNA aminoacylation, tRNA aminoacylation for protein translation, cellular protein metabolic process, RNA processing, ligase activity, forming aminoacyl-tRNA and related compounds, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.