PH01000916G0140's details annotation
1.Annotation
ICBR annotation: 3-isopropylmalate dehydratase large subunit 2, putative, expressed
Blast result AT4G13430 : 5.00E-177
Blast annotation: isopropyl malate isomerase large subunit 1
2.Location
Scaffold: PH01000916
Strand: +
| Region | Start | End |
| gene | 102347 | 109036 |
| mRNA | 102347 | 109036 |
| exon | 102347 | 102942 |
| exon | 103040 | 103363 |
| exon | 103497 | 103565 |
| exon | 103646 | 103762 |
| exon | 104389 | 104463 |
| exon | 104563 | 104640 |
| exon | 104718 | 104813 |
| exon | 104995 | 105044 |
| exon | 105854 | 105908 |
| exon | 105976 | 106107 |
| exon | 106966 | 107026 |
| exon | 107166 | 107193 |
| exon | 107461 | 107515 |
| exon | 107609 | 107725 |
| exon | 108581 | 108628 |
| exon | 108708 | 109036 |
| CDS | 102775 | 102942 |
| CDS | 103040 | 103363 |
| CDS | 103497 | 103565 |
| CDS | 103646 | 103762 |
| CDS | 104389 | 104463 |
| CDS | 104563 | 104640 |
| CDS | 104718 | 104813 |
| CDS | 104995 | 105044 |
| CDS | 105854 | 105908 |
| CDS | 105976 | 106107 |
| CDS | 106966 | 107026 |
| CDS | 107166 | 107193 |
| CDS | 107461 | 107515 |
| CDS | 107609 | 107725 |
| CDS | 108581 | 108628 |
| CDS | 108708 | 108908 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00330.19 | Aconitase | 83 | 405 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0008652 | cellular amino acid biosynthetic process |
| GO:0016836 | hydro-lyase activity |
| GO:0051539 | 4 iron, 4 sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.