PH01000921G0090's details annotation
1.Annotation
ICBR annotation: THO complex subunit 1, putative, expressed
Blast result AT5G09860 : 5.00E-164
Blast annotation: nuclear matrix protein-related
2.Location
Scaffold: PH01000921
Strand: +
| Region | Start | End |
| gene | 41896 | 50355 |
| mRNA | 41896 | 50355 |
| exon | 41896 | 42139 |
| exon | 42288 | 42371 |
| exon | 42509 | 42583 |
| exon | 42931 | 42994 |
| exon | 43159 | 43304 |
| exon | 43347 | 43355 |
| exon | 43420 | 43491 |
| exon | 43846 | 43918 |
| exon | 44023 | 44088 |
| exon | 44234 | 44280 |
| exon | 44408 | 44479 |
| exon | 44591 | 44719 |
| exon | 44807 | 44872 |
| exon | 45591 | 45685 |
| exon | 47881 | 47947 |
| exon | 48511 | 48582 |
| exon | 48706 | 48756 |
| exon | 49551 | 49739 |
| exon | 49853 | 50355 |
| CDS | 41996 | 42139 |
| CDS | 42288 | 42371 |
| CDS | 42509 | 42583 |
| CDS | 42931 | 42994 |
| CDS | 43159 | 43304 |
| CDS | 43347 | 43355 |
| CDS | 43420 | 43491 |
| CDS | 43846 | 43918 |
| CDS | 44023 | 44088 |
| CDS | 44234 | 44280 |
| CDS | 44408 | 44479 |
| CDS | 44591 | 44719 |
| CDS | 44807 | 44872 |
| CDS | 45591 | 45685 |
| CDS | 47881 | 47947 |
| CDS | 48511 | 48582 |
| CDS | 48706 | 48756 |
| CDS | 49551 | 49739 |
| CDS | 49853 | 50047 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11957.7 | efThoc1 | 124 | 351 |
| PF11957.7 | efThoc1 | 383 | 447 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | THO complex subunit 1 | ko03041 | K12878 |
| RNA transport | THO complex subunit 1 | ko03013 | K12878 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.