PH01000926G0330's details annotation
1.Annotation
ICBR annotation: oryzain gamma chain precursor, putative, expressed
Blast result AT5G60360 : 2.00E-144
Blast annotation: aleurain-like protease
2.Location
Scaffold: PH01000926
Strand: -
| Region | Start | End |
| gene | 181231 | 185793 |
| mRNA | 181231 | 185793 |
| exon | 181231 | 181554 |
| exon | 181858 | 181993 |
| exon | 182178 | 182309 |
| exon | 182401 | 182665 |
| exon | 184267 | 184340 |
| exon | 185092 | 185210 |
| exon | 185298 | 185419 |
| exon | 185508 | 185793 |
| CDS | 181445 | 181554 |
| CDS | 181858 | 181993 |
| CDS | 182178 | 182309 |
| CDS | 182401 | 182665 |
| CDS | 184267 | 184340 |
| CDS | 185092 | 185210 |
| CDS | 185298 | 185419 |
| CDS | 185508 | 185710 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08246.11 | Inhibitor_I29 | 62 | 118 |
| PF00112.22 | Peptidase_C1 | 145 | 360 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008234 | cysteine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.