PH01000931G0350's details annotation
1.Annotation
ICBR annotation: OsFBT4 - F-box and tubby domain containing protein, expressed
Blast result AT1G47270 : 3.00E-120
Blast annotation: tubby like protein 6
2.Location
Scaffold: PH01000931
Strand: -
| Region | Start | End |
| gene | 250675 | 257732 |
| mRNA | 250675 | 257732 |
| exon | 250675 | 252140 |
| exon | 252247 | 252379 |
| exon | 253238 | 253325 |
| exon | 253432 | 253656 |
| exon | 255811 | 257732 |
| CDS | 251468 | 252140 |
| CDS | 252247 | 252379 |
| CDS | 253238 | 253325 |
| CDS | 253432 | 253656 |
| CDS | 255811 | 255849 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 25 | 75 |
| PF01167.17 | Tub | 88 | 380 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.