PH01000940G0190's details annotation
1.Annotation
ICBR annotation: ZOS12-03 - C2H2 zinc finger protein, expressed
Blast result AT5G40710 : 1.60E-58
Blast annotation: zinc finger (C2H2 type) family protein
2.Location
Scaffold: PH01000940
Strand: +
| Region | Start | End |
| gene | 168297 | 173827 |
| mRNA | 168297 | 173827 |
| exon | 168297 | 168813 |
| exon | 170466 | 170486 |
| exon | 171064 | 171089 |
| exon | 171475 | 171703 |
| exon | 172576 | 172698 |
| exon | 173534 | 173591 |
| exon | 173646 | 173827 |
| CDS | 168739 | 168813 |
| CDS | 170466 | 170486 |
| CDS | 171064 | 171089 |
| CDS | 171475 | 171703 |
| CDS | 172576 | 172698 |
| CDS | 173534 | 173591 |
| CDS | 173646 | 173752 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.