PH01000946G0050's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT3G05090 : 2.00E-103
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000946
Strand: -
| Region | Start | End |
| gene | 23728 | 27107 |
| mRNA | 23728 | 27107 |
| exon | 23728 | 23967 |
| exon | 24154 | 24251 |
| exon | 24387 | 24650 |
| exon | 24741 | 24830 |
| exon | 24904 | 24966 |
| exon | 25634 | 25792 |
| exon | 25937 | 26069 |
| exon | 26727 | 27107 |
| CDS | 23886 | 23967 |
| CDS | 24154 | 24251 |
| CDS | 24387 | 24650 |
| CDS | 24741 | 24830 |
| CDS | 24904 | 24966 |
| CDS | 25634 | 25792 |
| CDS | 25937 | 26069 |
| CDS | 26727 | 26953 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000766 | MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001012 | clathrin_coat clathrin_coat_assembly clathrin_binding 1-phosphatidylinositol_binding WRKY Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001731 | Peroxisome Fatty_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 121 | 154 |
| PF00400.31 | WD40 | 166 | 197 |
| PF00400.31 | WD40 | 202 | 241 |
| PF00400.31 | WD40 | 287 | 318 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.