PH01000949G0720's details annotation
1.Annotation
ICBR annotation: REX1 DNA Repair family protein, expressed
Blast result AT1G12400 : 6.30E-28
Blast annotation: Nucleotide excision repair, TFIIH, subunit TTDA
2.Location
Scaffold: PH01000949
Strand: -
| Region | Start | End |
| gene | 461641 | 463071 |
| mRNA | 461641 | 463071 |
| exon | 461641 | 462160 |
| exon | 462250 | 463071 |
| CDS | 461983 | 462160 |
| CDS | 462250 | 462284 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06331.11 | Tfb5 | 1 | 67 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | TFIIH basal transcription factor complex TTD-A subunit | ko03022 | K10845 |
| Nucleotide excision repair | TFIIH basal transcription factor complex TTD-A subunit | ko03420 | K10845 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000439 | core TFIIH complex |
| GO:0006289 | nucleotide-excision repair |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.