PH01000953G0360's details annotation
1.Annotation
ICBR annotation: roothairless 1, putative, expressed
Blast result AT1G47550 : 0.00E+00
Blast annotation: exocyst complex component sec3A
2.Location
Scaffold: PH01000953
Strand: -
| Region | Start | End |
| gene | 245960 | 253890 |
| mRNA | 245960 | 253890 |
| exon | 245960 | 246445 |
| exon | 246551 | 246721 |
| exon | 246909 | 246973 |
| exon | 247091 | 247238 |
| exon | 247320 | 247493 |
| exon | 248112 | 248240 |
| exon | 248580 | 248717 |
| exon | 248800 | 248901 |
| exon | 249589 | 249693 |
| exon | 249889 | 250006 |
| exon | 250183 | 250340 |
| exon | 250603 | 250705 |
| exon | 251013 | 251080 |
| exon | 251173 | 251253 |
| exon | 251626 | 251702 |
| exon | 253540 | 253890 |
| CDS | 246353 | 246445 |
| CDS | 246551 | 246721 |
| CDS | 246909 | 246973 |
| CDS | 247091 | 247238 |
| CDS | 247320 | 247493 |
| CDS | 248112 | 248240 |
| CDS | 248580 | 248717 |
| CDS | 248800 | 248901 |
| CDS | 249589 | 249693 |
| CDS | 249889 | 250006 |
| CDS | 250183 | 250340 |
| CDS | 250603 | 250705 |
| CDS | 251013 | 251080 |
| CDS | 251173 | 251253 |
| CDS | 251626 | 251702 |
| CDS | 253540 | 253711 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15277.5 | Sec3-PIP2_bind | 50 | 145 |
| PF09763.8 | Sec3_C | 227 | 410 |
| PF09763.8 | Sec3_C | 532 | 628 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.