Annotation of co-expression genes

PH01000954G0440's details annotation

1.Annotation

ICBR annotation: ATP synthase subunit alpha, putative, expressed

Blast result ATCG00120 : 0.00E+00
Blast annotation: ATP synthase subunit alpha

2.Location

Scaffold: PH01000954
Strand: +

RegionStartEnd
gene257118260428
mRNA257118260428
exon257118260428
CDS258620260143

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02874.22ATP-synt_ab_N2793
PF00006.24ATP-synt_ab150365
PF00306.26ATP-synt_ab_C372496

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Oxidative phosphorylationF-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]ko00190K02111
PhotosynthesisF-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]ko00195K02111

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0015986ATP synthesis coupled proton transport
GO:0015991ATP hydrolysis coupled proton transport
GO:0015992proton transport
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0033178proton-transporting two-sector ATPase complex, catalytic domain
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046034ATP metabolic process
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0046961proton-transporting ATPase activity, rotational mechanism

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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