PH01000962G0250's details annotation
1.Annotation
ICBR annotation: 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed
Blast result AT4G33240 : 0
Blast annotation: 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases
2.Location
Scaffold: PH01000962
Strand: -
| Region | Start | End |
| gene | 180339 | 194592 |
| mRNA | 180339 | 194592 |
| exon | 180339 | 182979 |
| exon | 184279 | 184539 |
| exon | 185491 | 186975 |
| exon | 187027 | 187157 |
| exon | 188261 | 188339 |
| exon | 189421 | 189576 |
| exon | 189681 | 189804 |
| exon | 189954 | 190219 |
| exon | 190472 | 191446 |
| exon | 191775 | 192119 |
| exon | 192200 | 192353 |
| exon | 192603 | 193337 |
| exon | 193772 | 194592 |
| CDS | 182653 | 182979 |
| CDS | 184279 | 184539 |
| CDS | 185491 | 186975 |
| CDS | 187027 | 187157 |
| CDS | 188261 | 188339 |
| CDS | 189421 | 189576 |
| CDS | 189681 | 189804 |
| CDS | 189954 | 190219 |
| CDS | 190472 | 191446 |
| CDS | 191775 | 192119 |
| CDS | 192200 | 192353 |
| CDS | 192603 | 193337 |
| CDS | 193772 | 194373 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01363.20 | FYVE | 33 | 100 |
| PF00118.23 | Cpn60_TCP1 | 386 | 652 |
| PF01504.17 | PIP5K | 1624 | 1788 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Inositol phosphate metabolism | 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.15] | ko00562 | K00921 |
| Phosphatidylinositol signaling system | 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.15] | ko04070 | K00921 |
| Phagosome | 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.15] | ko04145 | K00921 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0016307 | phosphatidylinositol phosphate kinase activity |
| GO:0044267 | cellular protein metabolic process |
| GO:0046488 | phosphatidylinositol metabolic process |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.