PH01000965G0470's details annotation
1.Annotation
ICBR annotation: STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed
Blast result AT4G22130 : 0.00E+00
Blast annotation: STRUBBELIG-receptor family 8
2.Location
Scaffold: PH01000965
Strand: +
| Region | Start | End |
| gene | 324662 | 331291 |
| mRNA | 324662 | 331291 |
| exon | 324662 | 325512 |
| exon | 325629 | 325761 |
| exon | 326396 | 326461 |
| exon | 326535 | 326606 |
| exon | 327726 | 327797 |
| exon | 327897 | 327962 |
| exon | 328042 | 328107 |
| exon | 328193 | 328518 |
| exon | 329142 | 329398 |
| exon | 329774 | 330045 |
| exon | 330174 | 330270 |
| exon | 330393 | 330532 |
| exon | 330622 | 330778 |
| exon | 330879 | 331291 |
| CDS | 325428 | 325512 |
| CDS | 325629 | 325761 |
| CDS | 326396 | 326461 |
| CDS | 326535 | 326606 |
| CDS | 327726 | 327797 |
| CDS | 327897 | 327962 |
| CDS | 328042 | 328107 |
| CDS | 328193 | 328518 |
| CDS | 329142 | 329398 |
| CDS | 329774 | 330045 |
| CDS | 330174 | 330270 |
| CDS | 330393 | 330532 |
| CDS | 330622 | 330778 |
| CDS | 330879 | 331037 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 26 | 66 |
| PF13855.5 | LRR_8 | 91 | 150 |
| PF07714.16 | Pkinase_Tyr | 362 | 619 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.