PH01000974G0340's details annotation
1.Annotation
ICBR annotation: 40S ribosomal protein S15a, putative, expressed
Blast result AT5G59850 : 3.60E-69
Blast annotation: Ribosomal protein S8 family protein
2.Location
Scaffold: PH01000974
Strand: +
| Region | Start | End |
| gene | 227984 | 229572 |
| mRNA | 227984 | 229572 |
| exon | 227984 | 228593 |
| exon | 228670 | 228830 |
| exon | 228967 | 229572 |
| CDS | 228461 | 228593 |
| CDS | 228670 | 228830 |
| CDS | 228967 | 229065 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00410.18 | Ribosomal_S8 | 7 | 130 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S15Ae | ko03011 | K02957 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.