PH01000980G0570's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G41770 : 0.00E+00
Blast annotation: Protein of unknown function (DUF288)
2.Location
Scaffold: PH01000980
Strand: +
| Region | Start | End |
| gene | 405475 | 411522 |
| mRNA | 405475 | 411522 |
| exon | 405475 | 405598 |
| exon | 406973 | 407852 |
| exon | 407902 | 408437 |
| exon | 410196 | 410322 |
| exon | 410440 | 410887 |
| exon | 411048 | 411522 |
| CDS | 405591 | 405598 |
| CDS | 406973 | 407852 |
| CDS | 407902 | 408437 |
| CDS | 410196 | 410322 |
| CDS | 410440 | 410887 |
| CDS | 411048 | 411241 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001344 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine biosynthetic process, Selenocompound_metabolism cysteine-type endopeptidase activity, cellular amino acid biosynthetic process, Cysteine_and_methionine_metabolism proton transport, proteolysis, hydrogen-translocating pyrophosphatase activity, inorganic diphosphatase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03385.16 | STELLO | 300 | 373 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.