PH01000985G0220's details annotation
1.Annotation
ICBR annotation: lipase class 3 family protein, putative, expressed
Blast result AT4G16070 : 4.00E-100
Blast annotation: Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3
2.Location
Scaffold: PH01000985
Strand: -
| Region | Start | End |
| gene | 115549 | 124365 |
| mRNA | 115549 | 124365 |
| exon | 115549 | 116317 |
| exon | 116905 | 117060 |
| exon | 117479 | 117597 |
| exon | 118066 | 118168 |
| exon | 118881 | 119153 |
| exon | 119265 | 119456 |
| exon | 120631 | 120864 |
| exon | 122254 | 122324 |
| exon | 122641 | 124365 |
| CDS | 115721 | 116317 |
| CDS | 116905 | 117060 |
| CDS | 117479 | 117597 |
| CDS | 118066 | 118168 |
| CDS | 118881 | 119153 |
| CDS | 119265 | 119456 |
| CDS | 120631 | 120864 |
| CDS | 122254 | 122324 |
| CDS | 122641 | 122746 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000635 | CK1_CK1 (from iTAK) regulation of cell shape, cell division, SNARE_interactions_in_vesicular_transport Pyrimidine_metabolism |
| coexpression network | CFinderM001266 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis oxo-acid-lyase activity, AP2/ERF-ERF Transcription_Regulator(from iTAK) ERF Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01764.24 | Lipase_3 | 220 | 356 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004806 | triglyceride lipase activity |
| GO:0006629 | lipid metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.