Annotation of co-expression genes

PH01000985G0480's details annotation

1.Annotation

ICBR annotation: GHMP kinases ATP-binding protein, putative, expressed

Blast result AT3G06580 : 0.00E+00
Blast annotation: Mevalonate/galactokinase family protein

2.Location

Scaffold: PH01000985
Strand: +

RegionStartEnd
gene295199297374
mRNA295199297374
exon295199295564
exon295648295820
exon296764296810
exon296944297038
exon297140297374
CDS295369295564
CDS295648295820
CDS296764296810
CDS296944297038
CDS297140297357

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10509.8GalKase_gal_bdg4996
PF00288.25GHMP_kinases_N162226
PF08544.12GHMP_kinases_C402474

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Galactose metabolismgalactokinase [EC:2.7.1.6]ko00052K00849
Amino sugar and nucleotide sugar metabolismgalactokinase [EC:2.7.1.6]ko00520K00849

10.Gene Ontology

GO AccessionGO Annotation
GO:0004335galactokinase activity
GO:0005524ATP binding
GO:0005737cytoplasm
GO:0006012galactose metabolic process
GO:0008152metabolic process
GO:0016301kinase activity
GO:0016773phosphotransferase activity, alcohol group as acceptor
GO:0046835carbohydrate phosphorylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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