PH01001000G0090's details annotation
1.Annotation
ICBR annotation: harpin-induced protein 1 domain containing protein, expressed
Blast result AT2G27080 : 1.60E-44
Blast annotation: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
2.Location
Scaffold: PH01001000
Strand: -
| Region | Start | End |
| gene | 64306 | 65668 |
| mRNA | 64306 | 65668 |
| exon | 64306 | 64949 |
| exon | 65056 | 65115 |
| exon | 65357 | 65668 |
| CDS | 64665 | 64949 |
| CDS | 65056 | 65115 |
| CDS | 65357 | 65521 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03168.12 | LEA_2 | 149 | 253 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.