Annotation of co-expression genes

PH01001005G0010's details annotation

1.Annotation

ICBR annotation: OsLonP4 - Putative Lon protease homologue, expressed

Blast result AT5G47040 : 0.00E+00
Blast annotation: lon protease 2

2.Location

Scaffold: PH01001005
Strand: -

RegionStartEnd
gene1811126650
mRNA1811126650
exon1811118864
exon1920919310
exon1961219743
exon2001820212
exon2032120614
exon2136021573
exon2187822008
exon2234722553
exon2264222843
exon2293423061
exon2333823421
exon2355223731
exon2394924040
exon2438824557
exon2546225573
exon2567125777
exon2644326650
CDS1878118864
CDS1920919310
CDS1961219743
CDS2001820212
CDS2032120614
CDS2136021573
CDS2187822008
CDS2234722553
CDS2264222843
CDS2293423061
CDS2333823421
CDS2355223731
CDS2394924040
CDS2438824557
CDS2546225573
CDS2567125777
CDS2644326552

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02190.15LON_substr_bdg12254
PF00004.28AAA405542
PF05362.12Lon_C667787

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0004176ATP-dependent peptidase activity
GO:0004252serine-type endopeptidase activity
GO:0005524ATP binding
GO:0006508proteolysis
GO:0006515misfolded or incompletely synthesized protein catabolic process
GO:0017111nucleoside-triphosphatase activity
GO:0030163protein catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.