PH01001005G0400's details annotation
1.Annotation
ICBR annotation: triosephosphate isomerase, chloroplast precursor, putative, expressed
Blast result AT2G21170 : 4.00E-112
Blast annotation: triosephosphate isomerase
2.Location
Scaffold: PH01001005
Strand: -
| Region | Start | End |
| gene | 239589 | 245120 |
| mRNA | 239589 | 245120 |
| exon | 239589 | 239884 |
| exon | 240162 | 240244 |
| exon | 240635 | 240808 |
| exon | 240893 | 241039 |
| exon | 241860 | 241992 |
| exon | 242143 | 242227 |
| exon | 242464 | 242587 |
| exon | 243367 | 243436 |
| exon | 244308 | 245120 |
| CDS | 239828 | 239884 |
| CDS | 240162 | 240244 |
| CDS | 240635 | 240808 |
| CDS | 240893 | 241039 |
| CDS | 241860 | 241992 |
| CDS | 242143 | 242227 |
| CDS | 242464 | 242587 |
| CDS | 243367 | 243436 |
| CDS | 244308 | 244595 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00121.17 | TIM | 89 | 232 |
| PF00121.17 | TIM | 238 | 376 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | triosephosphate isomerase (TIM) [EC:5.3.1.1] | ko00010 | K01803 |
| Fructose and mannose metabolism | triosephosphate isomerase (TIM) [EC:5.3.1.1] | ko00051 | K01803 |
| Inositol phosphate metabolism | triosephosphate isomerase (TIM) [EC:5.3.1.1] | ko00562 | K01803 |
| Carbon fixation in photosynthetic organisms | triosephosphate isomerase (TIM) [EC:5.3.1.1] | ko00710 | K01803 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004807 | triose-phosphate isomerase activity |
| GO:0006096 | glycolysis |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.