PH01001006G0420's details annotation
1.Annotation
ICBR annotation: OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed
Blast result AT2G30950 : 0.00E+00
Blast annotation: FtsH extracellular protease family
2.Location
Scaffold: PH01001006
Strand: +
| Region | Start | End |
| gene | 286070 | 291936 |
| mRNA | 286070 | 291936 |
| exon | 286070 | 287940 |
| exon | 288269 | 288582 |
| exon | 289640 | 289880 |
| exon | 289925 | 291936 |
| CDS | 286807 | 287940 |
| CDS | 288269 | 288582 |
| CDS | 289640 | 289880 |
| CDS | 289925 | 290389 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00004.28 | AAA | 250 | 381 |
| PF01434.17 | Peptidase_M41 | 444 | 564 |
| PF01434.17 | Peptidase_M41 | 603 | 695 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0004222 | metalloendopeptidase activity |
| GO:0005524 | ATP binding |
| GO:0006508 | proteolysis |
| GO:0016020 | membrane |
| GO:0017111 | nucleoside-triphosphatase activity |
| GO:0030163 | protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.