PH01001013G0300's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT1G18660 : 3.30E-72
Blast annotation: zinc finger (C3HC4-type RING finger) family protein
2.Location
Scaffold: PH01001013
Strand: -
| Region | Start | End |
| gene | 232698 | 240916 |
| mRNA | 232698 | 240916 |
| exon | 232698 | 233144 |
| exon | 233689 | 233725 |
| exon | 233797 | 233858 |
| exon | 233932 | 233970 |
| exon | 234432 | 234609 |
| exon | 234977 | 235048 |
| exon | 235308 | 235369 |
| exon | 236256 | 236348 |
| exon | 236464 | 236548 |
| exon | 236720 | 236802 |
| exon | 240300 | 240404 |
| exon | 240531 | 240916 |
| CDS | 233043 | 233144 |
| CDS | 233689 | 233725 |
| CDS | 233797 | 233858 |
| CDS | 233932 | 233970 |
| CDS | 234432 | 234609 |
| CDS | 234977 | 235048 |
| CDS | 235308 | 235369 |
| CDS | 236256 | 236348 |
| CDS | 236464 | 236548 |
| CDS | 236720 | 236802 |
| CDS | 240300 | 240404 |
| CDS | 240531 | 240584 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02190.15 | LON_substr_bdg | 218 | 289 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004176 | ATP-dependent peptidase activity |
| GO:0005515 | protein binding |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.