PH01001030G0370's details annotation
1.Annotation
ICBR annotation: 3-oxoacyl-reductase, chloroplast precursor, putative, expressed
Blast result AT1G24360 : 6.00E-114
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01001030
Strand: +
| Region | Start | End |
| gene | 217702 | 223465 |
| mRNA | 217702 | 223465 |
| exon | 217702 | 218721 |
| exon | 220122 | 220264 |
| exon | 220594 | 220647 |
| exon | 221443 | 221523 |
| exon | 221627 | 221672 |
| exon | 221756 | 221850 |
| exon | 221928 | 221960 |
| exon | 222577 | 222711 |
| exon | 222800 | 222893 |
| exon | 223123 | 223205 |
| exon | 223309 | 223465 |
| CDS | 218577 | 218721 |
| CDS | 220122 | 220264 |
| CDS | 220594 | 220647 |
| CDS | 221443 | 221523 |
| CDS | 221627 | 221672 |
| CDS | 221756 | 221850 |
| CDS | 221928 | 221960 |
| CDS | 222577 | 222711 |
| CDS | 222800 | 222893 |
| CDS | 223123 | 223205 |
| CDS | 223309 | 223341 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13561.5 | adh_short_C2 | 77 | 311 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid biosynthesis | 3-oxoacyl-[acyl-carrier-protein] reductase [EC:1.1.1.100] | ko00061 | K00059 |
| Biosynthesis of unsaturated fatty acids | 3-oxoacyl-[acyl-carrier-protein] reductase [EC:1.1.1.100] | ko01040 | K00059 |
| Biotin metabolism | 3-oxoacyl-[acyl-carrier-protein] reductase [EC:1.1.1.100] | ko00780 | K00059 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004316 | 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity |
| GO:0006633 | fatty acid biosynthetic process |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0051287 | NAD binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.