PH01001030G0610's details annotation
1.Annotation
ICBR annotation: nuclear transport factor 2, putative, expressed
Blast result AT5G60980 : 1.20E-68
Blast annotation: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
2.Location
Scaffold: PH01001030
Strand: +
| Region | Start | End |
| gene | 359157 | 365121 |
| mRNA | 359157 | 365121 |
| exon | 359157 | 360534 |
| exon | 360622 | 360762 |
| exon | 360875 | 361207 |
| exon | 361292 | 361630 |
| exon | 362054 | 362213 |
| exon | 362297 | 362418 |
| exon | 362511 | 362576 |
| exon | 364093 | 364159 |
| exon | 364717 | 365121 |
| CDS | 360475 | 360534 |
| CDS | 360622 | 360762 |
| CDS | 360875 | 361207 |
| CDS | 361292 | 361630 |
| CDS | 362054 | 362213 |
| CDS | 362297 | 362418 |
| CDS | 362511 | 362576 |
| CDS | 364093 | 364159 |
| CDS | 364717 | 364970 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02136.19 | NTF2 | 21 | 136 |
| PF00076.21 | RRM_1 | 350 | 407 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0005622 | intracellular |
| GO:0006810 | transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.