Annotation of co-expression genes

PH01001031G0590's details annotation

1.Annotation

ICBR annotation: chaperone protein dnaJ 10, putative, expressed

Blast result AT1G77020 : 6.00E-138
Blast annotation: DNAJ heat shock N-terminal domain-containing protein

2.Location

Scaffold: PH01001031
Strand: -

RegionStartEnd
gene407919411050
mRNA407919411050
exon407919408538
exon408631408756
exon408865408945
exon409118409317
exon409374409532
exon409623409752
exon409909410062
exon410143410225
exon410333410392
exon410503411050
CDS408464408538
CDS408631408756
CDS408865408945
CDS409118409317
CDS409374409532
CDS409623409752
CDS409909410062
CDS410143410225
CDS410333410392
CDS410503410589

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000329extracellular ligand-gated ion channel activity,
postsynaptic membrane,
defense response,
ion transport,
coexpression networkCFinderM000932

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00226.30DnaJ668
PF14308.5DnaJ-X131321

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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