PH01001038G0030's details annotation
1.Annotation
ICBR annotation: cinnamoyl CoA reductase, putative, expressed
Blast result AT5G58490 : 1.00E-120
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01001038
Strand: +
| Region | Start | End |
| gene | 25790 | 28913 |
| mRNA | 25790 | 28913 |
| exon | 25790 | 26025 |
| exon | 26131 | 26303 |
| exon | 26414 | 26602 |
| exon | 27121 | 27283 |
| exon | 27880 | 28066 |
| exon | 28205 | 28913 |
| CDS | 25890 | 26025 |
| CDS | 26131 | 26303 |
| CDS | 26414 | 26602 |
| CDS | 27121 | 27283 |
| CDS | 27880 | 28066 |
| CDS | 28205 | 28352 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01370.20 | Epimerase | 14 | 252 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0044237 | cellular metabolic process |
| GO:0050662 | coenzyme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.