PH01001046G0060's details annotation
1.Annotation
ICBR annotation: tryptophan synthase beta chain 1, putative, expressed
Blast result AT4G27070 : 0.00E+00
Blast annotation: tryptophan synthase beta-subunit 2
2.Location
Scaffold: PH01001046
Strand: -
| Region | Start | End |
| gene | 29850 | 33912 |
| mRNA | 29850 | 33912 |
| exon | 29850 | 30199 |
| exon | 31649 | 31743 |
| exon | 31827 | 32269 |
| exon | 32493 | 32849 |
| exon | 33501 | 33912 |
| CDS | 30024 | 30199 |
| CDS | 31649 | 31743 |
| CDS | 31827 | 32269 |
| CDS | 32493 | 32849 |
| CDS | 33501 | 33827 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00291.24 | PALP | 120 | 450 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 315 Glycine, serine and threonine metabolism | tryptophan synthase beta chain [EC:4.2.1.20] | K01696 | |
| 429 Phenylalanine, tyrosine and tryptophan biosynthesis | tryptophan synthase beta chain [EC:4.2.1.20] | K01696 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000162 | tryptophan biosynthetic process |
| GO:0004834 | tryptophan synthase activity |
| GO:0006568 | tryptophan metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.